miRBase entry: ssc-mir-202

Stem-loop ssc-mir-202


Accession
MI0013157
Description
Sus scrofa ssc-mir-202 precursor miRNA
Gene family
MIPF0000121; mir-202

Literature search
7 open access papers mention ssc-mir-202
(10 sentences)

Sequence

4560 reads, 1410 reads per million, 12 experiments
cgccguuccgccUUCCUAUGCAUAUACUUCUUUgagggucuggccugaAGAGGUGUAGGCAUGGGAAaccggggcgacga
((.(((((((..(((((((((.(((((((((((.(((......)))))))))))))).)))))))))..))))))).)).

Structure
-  c       cc         A           g   gu 
 cg cguuccg  UUCCUAUGC UAUACUUCUUU agg  c
 || |||||||  ||||||||| ||||||||||| |||   
 gc gcggggc  AAGGGUACG AUGUGGAGAag ucc  u
a  a       ca         G           -   gg 


Annotation confidence High
Do you think this miRNA is real?

Genome context
chr14: 153169585-153169664 [-]

Database links

Mature ssc-miR-202-5p

Accession MIMAT0013948
Description Sus scrofa ssc-miR-202-5p mature miRNA
Sequence 13 - UUCCUAUGCAUAUACUUCUUU - 33
Evidence experimental
Illumina [1-2]

Mature ssc-miR-202-3p

Accession MIMAT0022956
Description Sus scrofa ssc-miR-202-3p mature miRNA
Sequence 49 - AGAGGUGUAGGCAUGGGAA - 67
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  2. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328