miRBase entry: ssc-mir-328

Stem-loop ssc-mir-328


Accession
MI0013158
Description
Sus scrofa ssc-mir-328 precursor miRNA
Gene family
MIPF0000203; mir-328

Literature search
4 open access papers mention ssc-mir-328
(4 sentences)

Sequence

4 reads, 12 reads per million, 4 experiments
ggagcgggggggcaggaggggcucagggagaaagugugugccgcccCUGGCCCUCUCUGCCCUUCCGUcccccguuccug
((((((((((((((((.(((((.(((((.....(((.....))))))))))))).)))))).......))))))))))..

Structure
--          -------      a     u     agaaa   u 
  ggagcggggg       ggcagg ggggc caggg     gug g
  ||||||||||       |||||| ||||| |||||     ||| u
  ccuugccccc       CCGUCU UCCCG GUCcc     cgc g
gu          UGCCUUC      C     -     -----   c 


Annotation confidence Not enough data
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Genome context
chr6: 25134077-25134156 [-]

Database links

Mature ssc-miR-328

Accession MIMAT0013949
Description Sus scrofa ssc-miR-328 mature miRNA
Sequence 47 - CUGGCCCUCUCUGCCCUUCCGU - 68
Evidence experimental
Illumina [1-3]

References

  1. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  2. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  3. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100