miRBase entry: ssc-mir-19b-1

Stem-loop ssc-mir-19b-1


Accession
MI0013160
Description
Sus scrofa ssc-mir-19b-1 precursor miRNA
Gene family
MIPF0000011; mir-19

Literature search
17 open access papers mention ssc-mir-19b-1
(33 sentences)

Sequence

3899 reads, 1155 reads per million, 13 experiments
cuguucuaugguuaguuuugcagguuugcauccagcugugugauauucugcUGUGCAAAUCCAUGCAAAACUGAcugugg
.....(((((((((((((((((((((((((..((((.............)))))))))).)).)))))))))))))))))

Structure
cuguu                 -  -      uc    ugugu 
     cuaugguuaguuuugca gg uuugca  cagc     g
     ||||||||||||||||| || ||||||  ||||     a
     ggugucAGUCAAAACGU CC AAACGU  GUcg     u
-----                 A  U      --    ucuua 


Annotation confidence Not enough data
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Genome context
chr11: 66610642-66610721 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from ssc-mir-19b-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ssc-miR-19b

Accession MIMAT0013950
Description Sus scrofa ssc-miR-19b mature miRNA
Sequence 52 - UGUGCAAAUCCAUGCAAAACUGA - 74
Evidence experimental
Illumina [1,3-4], cloned [2]

References

  1. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  2. PubMed ID: 20180025
    Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue
    "Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS"
    "Mol Biol Rep (2010) 37:3567-3574

  3. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  4. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100