miRBase entry: ssc-mir-574

Stem-loop ssc-mir-574


Accession
MI0013161
Description
Sus scrofa ssc-mir-574 precursor miRNA
Gene family
MIPF0000419; mir-574

Literature search
5 open access papers mention ssc-mir-574
(12 sentences)

Sequence

31 reads, 28 reads per million, 8 experiments
ugggugcgggcgugUGAGUGUGUGUGUGUGAGUGUGUgucgcuccgggucCACGCUCAUGCACACACCCACAcgcccgca
....((((((((((((.(.(((((((((((((((((.(.(.(....)).)))))))))))))))))))))))))))))))

Structure
uggg            A U                 U u g u 
    ugcgggcgugUG G GUGUGUGUGUGAGUGUG g c c c
    |||||||||||| | ||||||||||||||||| | | |  
    acgcccgcACAC C CACACACGUACUCGCAC c g g c
----            - -                 - u - g 


Annotation confidence High
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Genome context
chr8: 31672459-31672538 [+]

Database links

Mature ssc-miR-574-3p

Accession MIMAT0013951
Description Sus scrofa ssc-miR-574-3p mature miRNA
Sequence 51 - CACGCUCAUGCACACACCCACA - 72
Evidence experimental
Illumina [1,3-4], cloned [2]

Mature ssc-miR-574-5p

Accession MIMAT0037367
Description Sus scrofa ssc-miR-574-5p mature miRNA
Sequence 15 - UGAGUGUGUGUGUGUGAGUGUGU - 37
Evidence experimental
Illumina [5]

References

  1. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  2. PubMed ID: 20180025
    Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue
    "Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS"
    "Mol Biol Rep (2010) 37:3567-3574

  3. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  4. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100

  5. PubMed ID: 25230983
    The characteristics of the porcine (Sus scrofa) liver miRNAome with the use of next generation sequencing
    "Pawlina K, Gurgul A, Oczkowicz M, Bugno-Poniewierska M"
    "J Appl Genet (2015) 56:239-252