miRBase entry: ssc-mir-335

Stem-loop ssc-mir-335


Accession
MI0013165
Description
Sus scrofa ssc-mir-335 precursor miRNA
Gene family
MIPF0000196; mir-335

Literature search
6 open access papers mention ssc-mir-335
(10 sentences)

Sequence

950 reads, 320 reads per million, 13 experiments
cuuuugggcgggggUCAAGAGCAAUAACGAAAAAUGuuugucauaaaccguuuuucauuauugcuccugaccuccucuca
....((((.((((((((.(((((((((.((((((((.((......)).)))))))).))))))))).)))))))).))))

Structure
cuuu    c        A         C        u  gu 
    uggg gggggUCA GAGCAAUAA GAAAAAUG uu  c
    |||| |||||||| ||||||||| |||||||| ||   
    acuc ccuccagu cucguuauu cuuuuugc aa  a
----    u        c         a        c  au 


Annotation confidence Not enough data
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Genome context
chr18: 19338000-19338079 [-]

Database links

Mature ssc-miR-335

Accession MIMAT0013955
Description Sus scrofa ssc-miR-335 mature miRNA
Sequence 15 - UCAAGAGCAAUAACGAAAAAUG - 36
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  2. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328