Accession
MI0013166
Description
Sus scrofa
ssc-mir-500 precursor miRNA
Literature search
3 open access papers mention ssc-mir-500
(7 sentences)
(7 sentences)
Sequence
139
reads,
40
reads per million, 10 experiments
ccccucucUAAUCCUUGCUACCUGGGUGAGAgugcugugugaaugcaAUGCACCUGGGCAAGGAUUCUgagagugagagc
...(((((.(((((((((...(((((((....(((.........)))...))))))))))))))))..))))).......
...(((((.(((((((((...(((((((....(((.........)))...))))))))))))))))..))))).......
Structure
----ccc -U UAC AGAg ugu
cucuc AAUCCUUGC CUGGGUG ugc g
||||| ||||||||| ||||||| ||| u
gagag UUAGGAACG GGUCCAC acg g
cgagagu UC --- -GUA uaa
Annotation confidence
Medium
Do you think this miRNA is real?
Genome context
chrX: 48637994-48638073 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from ssc-mir-500
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature ssc-miR-500-3p
| Accession | MIMAT0013956 |
| Description | Sus scrofa ssc-miR-500-3p mature miRNA |
| Sequence | 48 - AUGCACCUGGGCAAGGAUUCU - 68 |
| Evidence |
experimental
Illumina [1,3], cloned [2] |
Mature ssc-miR-500-5p
| Accession | MIMAT0037369 |
| Description | Sus scrofa ssc-miR-500-5p mature miRNA |
| Sequence | 9 - UAAUCCUUGCUACCUGGGUGAGA - 31 |
| Evidence |
experimental
Illumina [4] |
References
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