miRBase entry: ssc-mir-455

Stem-loop ssc-mir-455


Accession
MI0013170
Description
Sus scrofa ssc-mir-455 precursor miRNA
Gene family
MIPF0000129; mir-455

Literature search
4 open access papers mention ssc-mir-455
(8 sentences)

Sequence

199 reads, 119 reads per million, 11 experiments
uggcgugagggUAUGUGCCUUUGGACUACAUCGuggaagccagcaccauGCAGUCCAUGGGCAUAUACACuugccucaag
(((.(((((.((((((((((.((((((.(((.(((........))).))).)))))).)))))))))).))))).)))..

Structure
--   c     g          U      A   C   gaa 
  ugg gugag gUAUGUGCCU UGGACU CAU Gug   g
  ||| ||||| |||||||||| |||||| ||| |||    
  acu cguuC CAUAUACGGG ACCUGA Gua cac   c
ga   c     A          U      C   c   gac 


Annotation confidence High
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Genome context
chr1: 286017379-286017458 [+]

Database links

Mature ssc-miR-455-3p

Accession MIMAT0013960
Description Sus scrofa ssc-miR-455-3p mature miRNA
Sequence 50 - GCAGUCCAUGGGCAUAUACAC - 70
Evidence experimental
Illumina [1-3]

Mature ssc-miR-455-5p

Accession MIMAT0022957
Description Sus scrofa ssc-miR-455-5p mature miRNA
Sequence 12 - UAUGUGCCUUUGGACUACAUCG - 33
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  2. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  3. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100