miRBase entry: ssc-mir-505

Stem-loop ssc-mir-505


Accession
MI0013171
Description
Sus scrofa ssc-mir-505 precursor miRNA
Gene family
MIPF0000217; mir-505

Literature search
3 open access papers mention ssc-mir-505
(4 sentences)

Sequence

124 reads, 103 reads per million, 12 experiments
gcacucagugggggagccaggaaguauugauguuucugccagguuagcgUCAACACUUGCUGGUUUCCUCUcuggagcau
((.(.(((.(((((((((((.((((.((((((((.((....))..)))))))).)))).))))))))))).)))).))..

Structure
--  a u   u           g    a        -u  g 
  gc c cag gggggagccag aagu uugauguu  cu c
  || | ||| ||||||||||| |||| ||||||||  ||  
  cg g guc CUCCUUUGGUC UUCA AACUgcga  gg c
ua  a -   U           G    C        uu  a 


Annotation confidence Not enough data
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Genome context
chrX: 130835642-130835721 [-]

Database links

Mature ssc-miR-505

Accession MIMAT0013961
Description Sus scrofa ssc-miR-505 mature miRNA
Sequence 50 - UCAACACUUGCUGGUUUCCUCU - 71
Evidence experimental
Illumina [1-3]

References

  1. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  2. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  3. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100