miRBase entry: ssc-mir-125b-1

Stem-loop ssc-mir-125b-1


Accession
MI0013172
Description
Sus scrofa ssc-mir-125b-1 precursor miRNA
Gene family
MIPF0000033; mir-10

Literature search
23 open access papers mention ssc-mir-125b-1
(162 sentences)

Sequence

1817 reads, 534 reads per million, 13 experiments
ccucucagUCCCUGAGACCCUAACUUGUGAuguuuaccguuuaaauccacggguuaggcucuugggagcugcgagccgug
.(((.((((.(((((((.(((((((((((..(((((.....))))).))))))))))).))))))).)))).))).....

Structure
----c   u    C       C           Au     c 
     cuc cagU CCUGAGA CCUAACUUGUG  guuua c
     ||| |||| ||||||| |||||||||||  ||||| g
     gag gucg ggguucu ggauugggcac  uaaau u
gugcc   c    a       c           -c     u 


Annotation confidence Not enough data
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Genome context
chr9: 54334908-54334987 [-]

Database links

Mature ssc-miR-125b

Accession MIMAT0002120
Description Sus scrofa ssc-miR-125b mature miRNA
Sequence 9 - UCCCUGAGACCCUAACUUGUGA - 30
Evidence experimental
Illumina [1-3]

References

  1. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  2. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  3. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100