Stem-loop ssc-mir-125b-1

Accession

MI0013172

Description

Sus scrofa ssc-mir-125b-1 precursor miRNA

Literature search

24 open access papers mention ssc-mir-125b-1
(157 sentences)

Sequence

18525042 reads, 13812.0 reads per million, 214 experiments

ccucucagUCCCUGAGACCCUAACUUGUGAuguuuaccguuuaaauccACGGGUUAGGCUCUUGGGAGCUgcgagccgug
.(((.((((.(((((((.(((((((((((..(((((.....))))).))))))))))).))))))).)))).))).....

Structure

----c   u    C       C           Au     c 
     cuc cagU CCUGAGA CCUAACUUGUG  guuua c
     ||| |||| ||||||| |||||||||||  ||||| g
     gag gUCG GGGUUCU GGAUUGGGCAc  uaaau u
gugcc   c    A       C           -c     u 

Annotation confidence High

Genome context

chr9: 54334908-54334987 [-]

Mature ssc-miR-125b-5p

• Accession: MIMAT0002120
• Description: Sus scrofa ssc-miR-125b-5p mature miRNA
• Sequence: 9 - UCCCUGAGACCCUAACUUGUGA - 30
• Evidence: experimental ; Illumina [1-3]

Mature ssc-miR-125b-1-3p

• Accession: MIMAT0052547
• Description: Sus scrofa ssc-miR-125b-1-3p mature miRNA
• Sequence: 49 - ACGGGUUAGGCUCUUGGGAGCU - 70
• Evidence: experimental ; Illumina [1-3]

References

1. PubMed ID: 19917043
   MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
   "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
   "Anim Genet (2010) 41:159-168


2. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328


3. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100