Stem-loop sequence zma-MIR159e

Accession

MI0013185 (change log)

Description

Zea mays miR159e stem-loop

Literature search

31 open access papers mention zma-MIR159e
(153 sentences)

Stem-loop

   -- c       -g   c   u  ucga    c    c  u   a     -    agcgcaaguccg 
5'   g agcuccu  cag auc gu    ggcu gccg gu cug ugauc cggc            g
     | |||||||  ||| ||| ||    |||| |||| || ||| ||||| ||||            c
3'   c ucgaggg  guu ugg ua    ccgg cggc cg ggc gcugg gccg            g
   ca c       aa   -   u  --ug    u    -  c   g     a    gcggcggcagcg 

Deep sequencing

15459 reads, 1.24e+04 reads per million, 215 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (B73_RefGen_v4; GCA_000005005.6): chr1: 249664337-249664463 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0013185

Mature sequence zma-miR159e-5p

• Accession: MIMAT0015309
• Previous IDs: zma-miR159e*
• Sequence: 2 - cagcuccugcagcaucuguuc - 22
• Evidence: not experimental

Mature sequence zma-miR159e-3p

• Accession: MIMAT0013974
• Previous IDs: zma-miR159e
• Sequence: 106 - auugguuugaagggagcucca - 126
• Deep sequencing: 322 reads, 110 experiments
• Evidence: not experimental

References

1. PMID:19936050 "A genome-wide characterization of microRNA genes in maize" Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D PLoS Genet. 5:e1000716(2009).