Stem-loop zma-MIR159h

Accession

MI0013188

Description

Zea mays zma-MIR159h precursor miRNA

Gene family

MIPF0000010; MIR159

Literature search

31 open access papers mention zma-MIR159h
(160 sentences)

Sequence

262 reads, 216 reads per million, 109 experiments

gGUGCUCCCUUCACACCAAUAAacggucgaucugaugggugguacagcugcucguucaugguucccacugucccaucucaucagagagagagaagaucgugagagagcgagagaugcuugagaugggcuugugguuugcaugaccgaggagcugccucguccccuucguugaccgcugUUUGGAGUGAAGGGAGCUCUGc
((.(((((((((((.((((..(.((((((((..((.((((((..(((((.((((.(((((....((((...(((((((((........((......((((......))))......)))))))))))...))))....))))).)))).)))))..))).)))..)))))))))).)..)))).))))))))))).))..

Structure

--  U           A    UA a        cu  -u   -   ua     g    u     guuc    ugu         ucagagag  agaaga    ga 
  gG GCUCCCUUCAC CCAA  A cggucgau  ga  ggg ugg  cagcu cucg ucaug    ccac   cccaucuca        ag      ucgu  g
  || ||||||||||| ||||  | ||||||||  ||  ||| |||  ||||| |||| |||||    ||||   |||||||||        ||      ||||   
  UC CGAGGGAAGUG GGUU  u gccaguug  cu  ccc gcu  gucga gagc aguac    ggug   ggguagagu        uc      agcg  a
cG  U           A    Ug c        --  uc   u   cc     g    c     guuu    uuc         --------  guagag    ag 

Annotation confidence Not enough data

Genome context

chr8: 10885935-10886134 [+]

Mature zma-miR159h-5p

• Accession: MIMAT0015312
• Description: Zea mays zma-miR159h-5p mature miRNA
• Sequence: 2 - GUGCUCCCUUCACACCAAUAA - 22
• Evidence: experimental ; Illumina [1]

Mature zma-miR159h-3p

• Accession: MIMAT0013977
• Description: Zea mays zma-miR159h-3p mature miRNA
• Sequence: 179 - UUUGGAGUGAAGGGAGCUCUG - 199
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716