miRBase entry: zma-MIR159k

Stem-loop zma-MIR159k


Accession
MI0013191
Description
Zea mays zma-MIR159k precursor miRNA
Gene family
MIPF0000010; MIR159

Literature search
31 open access papers mention zma-MIR159k
(156 sentences)

Sequence

6178 reads, 19488 reads per million, 144 experiments
gGUGCUCCCUUCAAACCAAUAAacggucgaucugaugggugguacaacugcucguucaugguucccacugucccaucucaucagagagagagaagaucgugagagagcgagagaugcuugagaugggcuugugguuugcaugaccgaggagcugcaucguccccuucguugaccgcugUUUGGAUUGAAGGGAGCUCUGc
((.(((((((((((.((((..(.((((((((..((.(((((((.((.((.((((.(((((....((((...(((((((((........((......((((......))))......)))))))))))...))))....))))).)))).)).)).)))).)))..)))))))))).)..)))).))))))))))).))..

Structure
--  U           A    UA a        cu  -u   -    a  a  g    u     guuc    ugu         ucagagag  agaaga    ga 
  gG GCUCCCUUCAA CCAA  A cggucgau  ga  ggg uggu ca cu cucg ucaug    ccac   cccaucuca        ag      ucgu  g
  || ||||||||||| ||||  | ||||||||  ||  ||| |||| || || |||| |||||    ||||   |||||||||        ||      ||||   
  UC CGAGGGAAGUU GGUU  u gccaguug  cu  ccc gcua gu ga gagc aguac    ggug   ggguagagu        uc      agcg  a
cG  U           A    Ug c        --  uc   u    c  c  g    c     guuu    uuc         --------  guagag    ag 


Annotation confidence Not enough data
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Genome context
chr8: 10947058-10947257 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from zma-MIR159k
Name Accession Chromosome Start End Strand Confidence




Database links

Mature zma-miR159k-5p

Accession MIMAT0015315
Description Zea mays zma-miR159k-5p mature miRNA
Sequence 2 - GUGCUCCCUUCAAACCAAUAA - 22
Evidence experimental
Illumina [1]

Mature zma-miR159k-3p

Accession MIMAT0013980
Description Zea mays zma-miR159k-3p mature miRNA
Sequence 179 - UUUGGAUUGAAGGGAGCUCUG - 199
Evidence experimental
Illumina [1]
Database links

References

  1. PubMed ID: 19936050
    A genome-wide characterization of microRNA genes in maize
    Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
    PLoS Genet (2009) 5:e1000716