Stem-loop sequence zma-MIR160g

Accession

MI0013192 (change log)

Description

Zea mays miR160g stem-loop

Gene family

MIPF0000032; MIR160

Literature search

21 open access papers mention zma-MIR160g
(72 sentences)

Stem-loop

   --    c       c          a   -   gc    c cgu 
5'   augc uggcucc uguaugccac cau gua  ccaa c   g
     |||| ||||||| |||||||||| ||| |||  |||| |    
3'   uacg accgagg acgugcggug gug cgu  gguu g   a
   ug    a       a          g   u   -a    a ugu 

Deep sequencing

1995 reads, 1.29e+03 reads per million, 148 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (B73_RefGen_v4; GCA_000005005.6): chr6: 94036699-94036784 [+]
• Overlapping transcripts:

  intergenic

Database links

• RNAcentral:URS000075C876_4577
• miRBase Tracker:MI0013192

Mature sequence zma-miR160g-5p

• Accession: MIMAT0013981
• Previous IDs: zma-miR160g
• Sequence: 2 - ugccuggcucccuguaugcca - 22
• Deep sequencing: 631 reads, 6 experiments
• Evidence: experimental; Illumina [1]

Mature sequence zma-miR160g-3p

• Accession: MIMAT0015316
• Previous IDs: zma-miR160g*
• Sequence: 65 - gcgugcaaggagccaagcaug - 85
• Deep sequencing: 94 reads, 5 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS0000546A73_4577

References

1. PMID:19936050 "A genome-wide characterization of microRNA genes in maize" Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D PLoS Genet. 5:e1000716(2009).