Stem-loop sequence zma-MIR164g

Accession

MI0013195 (change log)

Description

Zea mays miR164g stem-loop

Gene family

MIPF0000045; MIR164

Literature search

28 open access papers mention zma-MIR164g
(199 sentences)

Stem-loop

   --u        ca            a  cacgcc     --     cgccgccgaucuaccgaccucccaaaccugccuuaugguguggg 
5'    uggagaag  gggcacgugcag ga      ggagc  acggc                                            g
      ||||||||  |||||||||||| ||      |||||  |||||                                             
3'    accucuuc  cucgugcacguc cu      ccucg  uguug                                            g
   acc        cc            -  ------     au     uagcuucguuguugcugucgauagcgaagguggcugcuggaggu 

Deep sequencing

4942 reads, 1.26e+03 reads per million, 188 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (B73_RefGen_v4; GCA_000005005.6): chr6: 142646355-142646525 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0013195

Mature sequence zma-miR164g-5p

• Accession: MIMAT0013984
• Previous IDs: zma-miR164g
• Sequence: 2 - uggagaagcagggcacgugca - 22
• Deep sequencing: 3857 reads, 21 experiments
• Evidence: experimental; Illumina [1]

Mature sequence zma-miR164g-3p

• Accession: MIMAT0015319
• Previous IDs: zma-miR164g*
• Sequence: 150 - cacgugcuccccuucuccacc - 170
• Evidence: experimental; Illumina [1]

References

1. PMID:19936050 "A genome-wide characterization of microRNA genes in maize" Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D PLoS Genet. 5:e1000716(2009).