Stem-loop zma-MIR164h

Accession

MI0013196

Description

Zea mays zma-MIR164h precursor miRNA

Gene family

MIPF0000045; MIR164

Literature search

29 open access papers mention zma-MIR164h
(210 sentences)

Sequence

2260 reads, 9316 reads per million, 145 experiments

gUGGAGAAGCAGGGCACGUGUGaauucauucguuccaucgacggucuggcgccgacucacgcaucgccggcgcggcgagcugagcgcgugacacggaaagcagguccgccgcgccggcgcccgcgcuggccgaucgaccggcuaacuguagcuccacgaagcaaagccaggccagccggccgaucgaugcgugcgugCAUGUGCCCUUCUUCUCCAUCg
(((((((((.(((((((((((........(((......)))((((.....))))((.((((((((((((((((((.(.((((.(((((.(...((((.......)))))))))))))).))))))))))).(((((.((((((..(((..(((......))).....)))...)))))).))))))))))))).))))))))))))).)))))))))..

Structure

--         C           Gaauucauucguuccaucgacggucuggcgccg  u        -------------------------------------------------------          c a    a     u aca    aa 
  gUGGAGAAG AGGGCACGUGU                                 ac cacgcauc                                                       gccggcgcgg g gcug gcgcg g   cgga  g
  ||||||||| |||||||||||                                 || ||||||||                                                       |||||||||| | |||| ||||| |   ||||  c
  UACCUCUUC UCCCGUGUACg                                 ug gugcguag                                                       cggucgcgcc c cggc cgcgc c   gccu  a
gC         U           ---------------------------------  c        cuagccggccgaccggaccgaaacgaagcaccucgaugucaaucggccagcuagc          - g    -     - ---    gg 

Annotation confidence Not enough data

Genome context

chr8: 121773384-121773602 [+]

Mature zma-miR164h-5p

• Accession: MIMAT0013985
• Description: Zea mays zma-miR164h-5p mature miRNA
• Sequence: 2 - UGGAGAAGCAGGGCACGUGUG - 22
• Evidence: experimental ; Illumina [1]

Mature zma-miR164h-3p

• Accession: MIMAT0015320
• Description: Zea mays zma-miR164h-3p mature miRNA
• Sequence: 198 - CAUGUGCCCUUCUUCUCCAUC - 218
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716