Stem-loop zma-MIR169m

Accession

MI0013200

Description

Zea mays zma-MIR169m precursor miRNA

Gene family

MIPF0000832; MIR169_5

Literature search

30 open access papers mention zma-MIR169m
(216 sentences)

Sequence

165 reads, 491 reads per million, 2 experiments

uUAGCCAAGAAUGGCUUGCCUAucuccauuauuuuguucaucgcaggaagcccuuccgugauggaugaaauguggaugauGGCAUCCAUUCUUGGCUAAGu
((((((((((((((..((((.((((((((.((((((((((((((.((((....))))))))))))))))))))))).))))))).))))))))))))))..

Structure

--              CU    U   -     u              a    g 
  uUAGCCAAGAAUGG  UGCC Auc uccau auuuuguucaucgc ggaa c
  ||||||||||||||  |||| ||| ||||| |||||||||||||| ||||  
  AAUCGGUUCUUACC  ACGG uag aggug uaaaguagguagug ccuu c
uG              -U    -   u     -              -    c 

Annotation confidence Not enough data

Genome context

chr3: 102365461-102365561 [+]

Mature zma-miR169m-5p

• Accession: MIMAT0013989
• Description: Zea mays zma-miR169m-5p mature miRNA
• Sequence: 2 - UAGCCAAGAAUGGCUUGCCUA - 22
• Evidence: experimental ; Illumina [1]

Mature zma-miR169m-3p

• Accession: MIMAT0015324
• Description: Zea mays zma-miR169m-3p mature miRNA
• Sequence: 81 - GGCAUCCAUUCUUGGCUAAG - 100
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716