Stem-loop zma-MIR169n

Accession

MI0013201

Description

Zea mays zma-MIR169n precursor miRNA

Gene family

MIPF0000832; MIR169_5

Literature search

31 open access papers mention zma-MIR169n
(218 sentences)

Sequence

2 reads, 6 reads per million, 1 experiments

uUAGCCAAGAAUGGCUUGCCUAucuccacuguuugguucgucuugggagaccacccugaugauggguguacuguguggaugauGGCAGGCCUUCUUGGCUAAGc
(((((((((((.((((((((.((((((((..........((((....))))(((((.......)))))......))))).))))))))))))))))))))))..

Structure

--           U        U   -     uguuugguucgucuugggagac     ug 
  uUAGCCAAGAA GGCUUGCC Auc uccac                      caccc  a
  ||||||||||| |||||||| ||| |||||                      |||||  u
  AAUCGGUUCUU CCGGACGG uag aggug                      guggg  g
cG           -        -   u     ----------------ugucau     ua 

Annotation confidence Not enough data

Genome context

chr3: 233919759-233919862 [+]

Mature zma-miR169n-5p

• Accession: MIMAT0013990
• Description: Zea mays zma-miR169n-5p mature miRNA
• Sequence: 2 - UAGCCAAGAAUGGCUUGCCUA - 22
• Evidence: experimental ; Illumina [1]

Mature zma-miR169n-3p

• Accession: MIMAT0015325
• Description: Zea mays zma-miR169n-3p mature miRNA
• Sequence: 84 - GGCAGGCCUUCUUGGCUAAG - 103
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716