Stem-loop sequence zma-MIR390a

Accession

MI0013209 (change log)

Description

Zea mays miR390a stem-loop

Gene family

MIPF0000101; MIR390

Literature search

14 open access papers mention zma-MIR390a
(100 sentences)

Stem-loop

   -- a         g         cua   aaacac     u        -   --gc        --a     --        ga      u   g 
5'   g agcucagga ggauagcgc   gga      auaga cggagccg gcc    gaggagaa   gaaag  agccaaga  uaugug gau a
     | ||||||||| |||||||||   |||      ||||| |||||||| |||    ||||||||   |||||  ||||||||  |||||| ||| a
3'   c ucgaguccu ucuaucgcg   ucu      uaucu gucuuggu cgg    cuccucuu   uuuuc  ucgguucu  guacau cua u
   ca c         a         aag   ---aac     -        g   aggu        gug     ga        ag      -   a 

Deep sequencing

1299 reads, 366 reads per million, 147 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (B73_RefGen_v4; GCA_000005005.6): chr1: 298107396-298107576 [+]
• Overlapping transcripts:

  intergenic

Database links

• RNAcentral:URS000075A25C_4577
• miRBase Tracker:MI0013209

Mature sequence zma-miR390a-5p

• Accession: MIMAT0013998
• Previous IDs: zma-miR390a
• Sequence: 2 - aagcucaggagggauagcgcc - 22
• Deep sequencing: 1075 reads, 116 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS00005C2DB4_4577

Mature sequence zma-miR390a-3p

• Accession: MIMAT0015333
• Previous IDs: zma-miR390a*
• Sequence: 160 - cgcuaucuauccugagcucca - 180
• Deep sequencing: 124 reads, 9 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS000075C643_4577

References

1. PMID:19936050 "A genome-wide characterization of microRNA genes in maize" Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D PLoS Genet. 5:e1000716(2009).