Stem-loop zma-MIR395h

Accession

MI0013216

Description

Zea mays zma-MIR395h precursor miRNA

Gene family

MIPF0000016; MIR395

Literature search

18 open access papers mention zma-MIR395h
(85 sentences)

Sequence

4 reads, 235 reads per million, 3 experiments

aGUUCCCUUCAAGCACUUCACAUgaggcaccauucaaauaacacauuucaagauuaggugcauGUGAAGUGUUUGGGGGAACUCu
((((((((.((((((((((((((...(((((.........................)))))))))))))))))))))))))))..

Structure

--        U              gag     auucaaauaac 
  aGUUCCCU CAAGCACUUCACAU   gcacc           a
  |||||||| ||||||||||||||   |||||           c
  UCAAGGGG GUUUGUGAAGUGua   cgugg           a
uC        -              ---     auuagaacuuu 

Annotation confidence Not enough data

Genome context

chr2: 6287229-6287313 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from zma-MIR395h

Mature zma-miR395h-5p

• Accession: MIMAT0015340
• Description: Zea mays zma-miR395h-5p mature miRNA
• Sequence: 2 - GUUCCCUUCAAGCACUUCACAU - 23
• Evidence: experimental ; Illumina [1]

Mature zma-miR395h-3p

• Accession: MIMAT0014005
• Description: Zea mays zma-miR395h-3p mature miRNA
• Sequence: 64 - GUGAAGUGUUUGGGGGAACUC - 84
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716