Stem-loop sequence zma-MIR395h

Accession

MI0013216 (change log)

Description

Zea mays miR395h stem-loop

Gene family

MIPF0000016; MIR395

Literature search

18 open access papers mention zma-MIR395h
(84 sentences)

Stem-loop

   --        u              gag     -au  aaauaac 
5'   aguucccu caagcacuucacau   gcacc   uc       a
     |||||||| ||||||||||||||   |||||   ||        
3'   ucaagggg guuugugaagugua   cgugg   ag       c
   uc        -              ---     auu  aacuuua 

Deep sequencing

44 reads, 413 reads per million, 15 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (B73_RefGen_v4; GCA_000005005.6): chr2: 6287229-6287313 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from zma-MIR395h

• zma-MIR395a: chr2: 6288043-6288191 [-]
• zma-MIR395b: chr2: 6287388-6287501 [-]
• zma-MIR395h: chr2: 6287229-6287313 [-]
• zma-MIR395i: chr2: 6286588-6286657 [-]
• zma-MIR395e: chr2: 6286411-6286495 [-]

Database links

• miRBase Tracker:MI0013216

Mature sequence zma-miR395h-5p

• Accession: MIMAT0015340
• Previous IDs: zma-miR395h*
• Sequence: 2 - guucccuucaagcacuucacau - 23
• Deep sequencing: 7 reads, 2 experiments
• Evidence: experimental; Illumina [1]

Mature sequence zma-miR395h-3p

• Accession: MIMAT0014005
• Previous IDs: zma-miR395h
• Sequence: 64 - gugaaguguuugggggaacuc - 84
• Deep sequencing: 33 reads, 13 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:19936050 "A genome-wide characterization of microRNA genes in maize" Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D PLoS Genet. 5:e1000716(2009).