Stem-loop sequence zma-MIR395m

Accession

MI0013221 (change log)

Description

Zea mays miR395m stem-loop

Gene family

MIPF0000016; MIR395

Literature search

18 open access papers mention zma-MIR395m
(84 sentences)

Stem-loop

   --        u                a cu     uu    g 
5'   aguuccuu caaacacuucacaugg g  ucuca  ggug a
     |||||||| |||||||||||||||| |  |||||  ||||  
3'   ucaaggag guuugugaagugugcc c  agagu  uuau u
   uc        -                - --     uc    a 

Deep sequencing

45 reads, 583 reads per million, 23 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (B73_RefGen_v4; GCA_000005005.6): chr10: 78600541-78600622 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from zma-MIR395m

• zma-MIR395c: chr10: 78600687-78600824 [-]
• zma-MIR395m: chr10: 78600541-78600622 [-]
• zma-MIR395l: chr10: 78600412-78600492 [-]
• zma-MIR395k: chr10: 78600241-78600324 [-]

Database links

• miRBase Tracker:MI0013221

Mature sequence zma-miR395m-5p

• Accession: MIMAT0015345
• Previous IDs: zma-miR395m*
• Sequence: 2 - guuccuuucaaacacuucacau - 23
• Evidence: not experimental

Mature sequence zma-miR395m-3p

• Accession: MIMAT0014010
• Previous IDs: zma-miR395m
• Sequence: 61 - gugaaguguuuggaggaacuc - 81
• Deep sequencing: 13 reads, 7 experiments
• Evidence: not experimental

References

1. PMID:19936050 "A genome-wide characterization of microRNA genes in maize" Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D PLoS Genet. 5:e1000716(2009).