miRBase entry: zma-MIR395o

Stem-loop zma-MIR395o


Accession
MI0013223
Description
Zea mays zma-MIR395o precursor miRNA
Gene family
MIPF0000016; MIR395

Literature search
18 open access papers mention zma-MIR395o
(86 sentences)

Sequence

13 reads, 290 reads per million, 4 experiments
aGUUCUCUUCAAGCACUUCACGAggcaucacacugagagcuuuugugaaguguuugggggaacucuuggugucacaaaucauuugcauuugcuugauguuagucaugcaccaugugauaugagauaaaggacauggcaacguuuuguguuacuaggaguucccuacaagcacuucaugagaccuugacuuaauaaagggccauuGUGAAGUGUUUGGGUGAACUCu
(((((.((.(((((((((((((((((.......((((((.(((((((((((((((((((((((((((((((.((((((....((((...(((.((((....)))).))).(((((...............)))))))))...)))))).))))))))))))))).)))))))))))))))).))...)))).......))).)))))))))))))))).)))))..

Structure
--     U  U              -   aucacac    ---  c                -               u      ucau    -----------------------auu   u    g 
  aGUUC CU CAAGCACUUCACGA ggc       ugag   ag uuuugugaaguguuug ggggaacucuuggug cacaaa    uugc                          ugc ugau u
  ||||| || |||||||||||||| |||       ||||   || |||||||||||||||| ||||||||||||||| ||||||    ||||                          ||| ||||  
  UCAAG GG GUUUGUGAAGUGuu ccg       auuc   uc agaguacuucacgaac ucccuugaggaucau guguuu    aacg                          acg acug u
uC     U  -              a   ggaaaua    agu  c                a               u      -ugc    guacaggaaauagaguauaguguacc   u    a 


Annotation confidence Not enough data
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Genome context
chr10: 145466084-145466309 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from zma-MIR395o
Name Accession Chromosome Start End Strand Confidence




Database links

Mature zma-miR395o-5p

Accession MIMAT0015347
Description Zea mays zma-miR395o-5p mature miRNA
Sequence 2 - GUUCUCUUCAAGCACUUCACGA - 23
Evidence experimental
Illumina [1]

Mature zma-miR395o-3p

Accession MIMAT0014012
Description Zea mays zma-miR395o-3p mature miRNA
Sequence 205 - GUGAAGUGUUUGGGUGAACUC - 225
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 19936050
    A genome-wide characterization of microRNA genes in maize
    Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
    PLoS Genet (2009) 5:e1000716