Stem-loop sequence zma-MIR396f

Accession

MI0013226 (change log)

Description

Zea mays miR396f stem-loop

Gene family

MIPF0000047; MIR396

Literature search

22 open access papers mention zma-MIR396f
(76 sentences)

Stem-loop

   --                  a    u     uucuucucucuuggaacggcagcuuuc 
5'   uuuccacagcuuucuuga cuuc ucuuc                           u
     |||||||||||||||||| |||| |||||                           u
3'   aagggugucgaaagaacu gaag agaag                           c
   ag                  g    c     ccucuacucucucucucucugucuaag 

Deep sequencing

1110 reads, 417 reads per million, 128 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (B73_RefGen_v4; GCA_000005005.6): chr5: 220211653-220211769 [+]
• Overlapping transcripts:

  intergenic

Database links

• RNAcentral:URS000079E578_4577
• miRBase Tracker:MI0013226

Mature sequence zma-miR396f-5p

• Accession: MIMAT0014015
• Previous IDs: zma-miR396f
• Sequence: 2 - uuccacagcuuucuugaacuu - 22
• Deep sequencing: 824 reads, 113 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS00001D441B_4577

Mature sequence zma-miR396f-3p

• Accession: MIMAT0015350
• Previous IDs: zma-miR396f*
• Sequence: 96 - ggucaagaaagcugugggaag - 116
• Deep sequencing: 262 reads, 12 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS0000501BC6_4577

References

1. PMID:19936050 "A genome-wide characterization of microRNA genes in maize" Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D PLoS Genet. 5:e1000716(2009).