miRBase entry: zma-MIR396g

Stem-loop zma-MIR396g


Accession
MI0013227
Description
Zea mays zma-MIR396g precursor miRNA
Gene family
MIPF0000047; MIR396

Literature search
23 open access papers mention zma-MIR396g
(79 sentences)

Sequence

753 reads, 0 reads per million, 4 experiments
uUCCCACAGCUUUAUUGAACUGcccucuugcuugcuuggaucaauugaaacucgaucagguccacagcacagccugcugcaugcaugaugcaGUUCAAGAAAGCUGUGGAAGAu
...((((((((((.(((((((((..((.(((.(((.((((((.(((((...)))))..)))))).((((.....))))))).))).)).))))))))).)))))))))).....

Structure
--uUC          A         cc  u   u   -------------u      -a     a 
     CCACAGCUUU UUGAACUGc  uc ugc ugc              uggauc  auuga  
     |||||||||| |||||||||  || ||| |||              ||||||  ||||| a
     GGUGUCGAAA AACUUGacg  ag acg acg              accugg  uagcu  
uAGAA          G         -u  u   u   ucguccgacacgac      ac     c 


Annotation confidence Not enough data
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Genome context
chr5: 220222148-220222261 [+]

Database links

Mature zma-miR396g-5p

Accession MIMAT0014016
Description Zea mays zma-miR396g-5p mature miRNA
Sequence 2 - UCCCACAGCUUUAUUGAACUG - 22
Evidence experimental
Illumina [1]

Mature zma-miR396g-3p

Accession MIMAT0015351
Description Zea mays zma-miR396g-3p mature miRNA
Sequence 93 - GUUCAAGAAAGCUGUGGAAGA - 113
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 19936050
    A genome-wide characterization of microRNA genes in maize
    Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
    PLoS Genet (2009) 5:e1000716