Stem-loop zma-MIR397b

Accession

MI0013230

Description

Zea mays zma-MIR397b precursor miRNA

Literature search

15 open access papers mention zma-MIR397b
(75 sentences)

Sequence

1755 reads, 3829.0 reads per million, 94 experiments

AUCAUUGAGCGCAGCGUUGAUGAGCcagccgccgugccuccccugucggcugcggCGGCUCACCAGCGCUGCACUCAAUUacgc
...((((((.(((((((((.((((((.(((((...(((.........))).))))))))))).))))))))).)))))).....

Structure

--AUC      C         A      a     cgu   ucc 
     AUUGAG GCAGCGUUG UGAGCc gccgc   gcc   c
     |||||| ||||||||| |||||| |||||   |||   c
     UAACUC CGUCGCGAC ACUCGG Cggcg   cgg   u
cgcaU      A         C      -     --u   cug 

Annotation confidence Medium

Genome context

5: 84380089-84380172 [-]

Mature zma-miR397b-5p

• Accession: MIMAT0014019
• Description: Zea mays zma-miR397b-5p mature miRNA
• Sequence: 1 - AUCAUUGAGCGCAGCGUUGAUGAGC - 25
• Evidence: experimental ; Illumina [1]

Mature zma-miR397b-3p

• Accession: MIMAT0015353
• Description: Zea mays zma-miR397b-3p mature miRNA
• Sequence: 56 - CGGCUCACCAGCGCUGCACUCAAUU - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716