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miRBase |
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Stem-loop sequence zma-MIR398a |
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Accession | MI0013231 (change log) | ||||
Description | Zea mays miR398a stem-loop | ||||
Gene family | MIPF0000871; MIR398_2 | ||||
Literature search |
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15 open access papers mention zma-MIR398a | ||||
Stem-loop |
------------gggggcgaacugagaacacaugagaaua ug auugcuc cu - ac u c 5' a agaugag gc cg cggu gguucg g u | ||||||| || || |||| |||||| | 3' u ucuacuu cg gc gcca ccaggu c g cgcccccgcuggacucuuguguacgucguaauaauacgca gu -----gc cu u -- c g |
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Deep sequencing |
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Confidence |
Annotation confidence: not enough data
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Genome context |
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Database links |
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Mature sequence zma-miR398a-5p |
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Accession | MIMAT0015354 |
Previous IDs | zma-miR398a* |
Sequence |
2 - ggggcgaacugagaacacaug - 22 |
Deep sequencing | 18 reads, 2 experiments |
Evidence | experimental; Illumina [1] |
Mature sequence zma-miR398a-3p |
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Accession | MIMAT0014020 |
Previous IDs | zma-miR398a |
Sequence |
119 - uguguucucaggucgcccccg - 139 |
Deep sequencing | 32 reads, 12 experiments |
Evidence | experimental; Illumina [1] |
References |
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1 |
PMID:19936050
"A genome-wide characterization of microRNA genes in maize"
PLoS Genet. 5:e1000716(2009).
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