Stem-loop zma-MIR528a

Accession

MI0013239

Description

Zea mays zma-MIR528a precursor miRNA

Gene family

MIPF0000868; MIR528

Literature search

19 open access papers mention zma-MIR528a
(122 sentences)

Sequence

2959 reads, 6771 reads per million, 7 experiments

gUGGAAGGGGCAUGCAGAGGAGgagcacgagcgagguguggcuggaagaagcagccggggccugugugcuauauaccccucgcaagcucuccucacuccucuCCUGUGCCUGCCUCUUCCAUU
((((((((((((.(((.(((((.((...(((.((((...(((((.......)))))(((((.((((..............)))).))))))))).)))))))))).))).)))))))))))).

Structure

-            U   G     g  cac   c    uguggcuggaagaagcagcc     c    ugcuau 
 gUGGAAGGGGCA GCA AGGAG ag   gag gagg                    ggggc ugug      a
 |||||||||||| ||| ||||| ||   ||| ||||                    ||||| ||||       
 UACCUUCUCCGU CGU UCCuc uc   cuc cucc                    ucucg acgc      u
U            C   G     -  ---   a    --------------------     a    ucccca 

Annotation confidence Not enough data

Genome context

chr1: 6412284-6412406 [+]

Mature zma-miR528a-5p

• Accession: MIMAT0014028
• Description: Zea mays zma-miR528a-5p mature miRNA
• Sequence: 2 - UGGAAGGGGCAUGCAGAGGAG - 22
• Evidence: experimental ; Illumina [1]

Mature zma-miR528a-3p

• Accession: MIMAT0015362
• Description: Zea mays zma-miR528a-3p mature miRNA
• Sequence: 103 - CCUGUGCCUGCCUCUUCCAUU - 123
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716