Stem-loop sequence aae-mir-980

Accession

MI0013449 (change log)

Description

Aedes aegypti miR-980 stem-loop

Gene family

MIPF0000890; mir-980

Literature search

2 open access papers mention aae-mir-980
(6 sentences)

Stem-loop

   acu     ucg   g         u  u      c  gu 
5'    acaau   gcc uucauuggg ca cuagcu gu  u
      |||||   ||| ||||||||| || |||||| ||  g
3'    uguua   cgg aagugaucc gu gauuga ca  g
   ---     uaa   g         -  c      -  aa 

Deep sequencing

1443 reads, 50 reads per million, 2 experiments

Confidence

Annotation confidence: high

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Comments

This miRNA was experimentally identified in the closely related Aedes albopictus, for which there was no genome sequence, and therefore mapped to the Aedes aegypti genome [1].

Genome context

• Coordinates (AaegL1): supercont1.23: 1043020-1043095 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0013449

Mature sequence aae-miR-980-5p

• Accession: MIMAT0014235
• Previous IDs: aae-miR-980*
• Sequence: 10 - cggccguucauugggucaucuagc - 33
• Deep sequencing: 26 reads, 2 experiments
• Evidence: experimental; Illumina [1]

Mature sequence aae-miR-980-3p

• Accession: MIMAT0014236
• Previous IDs: aae-miR-980
• Sequence: 50 - uagcugccuagugaagggc - 68
• Deep sequencing: 1416 reads, 2 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:20167119 "Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus" Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR BMC Genomics. 11:119(2010).