Stem-loop sequence aae-mir-2940

Accession

MI0013489 (change log)

Description

Aedes aegypti miR-2940 stem-loop

Literature search

9 open access papers mention aae-mir-2940
(56 sentences)

Stem-loop

     u           a       ag     uuauuuuacc        uuucuuuuc    g 
5' ca ugguuuaucuu ucugucg  gcaag          ggauagug         guga c
   || ||||||||||| |||||||  |||||          ||||||||         ||||  
3' gu acuaaauagag ggacagc  uguuc          ccuaucac         cacu a
     c           -       --     ---uucucga        ---------    a 

Deep sequencing

80278 reads, 4e+03 reads per million, 2 experiments

Confidence

Annotation confidence: high

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Comments

This miRNA was experimentally identified in the closely related Aedes albopictus, for which there was no genome sequence, and therefore mapped to the Aedes aegypti genome [1].

Genome context

• Coordinates (AaegL1): supercont1.222: 643957-644065 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0013489

Mature sequence aae-miR-2940-5p

• Accession: MIMAT0014283
• Previous IDs: aae-miR-2940
• Sequence: 4 - ugguuuaucuuaucugucgaggc - 26
• Deep sequencing: 55498 reads, 2 experiments
• Evidence: experimental; Illumina [1]

Mature sequence aae-miR-2940-3p

• Accession: MIMAT0014284
• Previous IDs: aae-miR-2940*
• Sequence: 87 - gucgacagggagauaaaucacu - 108
• Deep sequencing: 24779 reads, 2 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:20167119 "Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus" Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR BMC Genomics. 11:119(2010).