Stem-loop sequence aae-mir-2944b

Accession

MI0013510 (change log)

Description

Aedes aegypti miR-2944b stem-loop

Gene family

MIPF0001335; mir-2944

Literature search

4 open access papers mention aae-mir-2944b
(5 sentences)

Stem-loop

   aucga   -    c c g         uga 
5'      agg aacu c g ugugauaua   c
        ||| |||| | | |||||||||   u
3'      ucc uuga g c acacuauau   c
   uauag   a    u a g         uag 

Deep sequencing

252 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (AaegL1): supercont1.464: 825313-825374 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from aae-mir-2944b

• aae-mir-286a: supercont1.464: 824995-825091 [+]
• aae-mir-2944b: supercont1.464: 825313-825374 [+]
• aae-mir-2944a: supercont1.464: 825450-825511 [+]
• aae-mir-309b: supercont1.464: 825629-825699 [+]

Database links

• miRBase Tracker:MI0013510

Mature sequence aae-miR-2944b-5p

• Accession: MIMAT0014304
• Previous IDs: aae-miR-2944b
• Sequence: 4 - gaaggaacucccggugugauaua - 26
• Deep sequencing: 204 reads, 2 experiments
• Evidence: experimental; 454 [1]

Mature sequence aae-miR-2944b-3p

• Accession: MIMAT0015373
• Previous IDs: aae-miR-2944b*
• Sequence: 38 - uaucacagcaguaguuaccuga - 59
• Deep sequencing: 48 reads, 2 experiments
• Evidence: experimental; 454 [1]

References

1. PMID:19961592 "Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs" Li S, Mead EA, Liang S, Tu Z BMC Genomics. 10:581(2009).