Stem-loop sequence aae-mir-9b

Accession

MI0013530 (change log)

Description

Aedes aegypti miR-9b stem-loop

Gene family

MIPF0000014; mir-9

Literature search

3 open access papers mention aae-mir-9b
(9 sentences)

Stem-loop

       -         auc         uuu          ----u  ua 
5' ucac guuuauugg   uuuggugau   agcuguaugc     ga  c
   |||| |||||||||   |||||||||   ||||||||||     ||   
3' agug uaaguaauc   aaaccacua   ucgauauacg     cu  g
       g         caa         -uu          uuagu  uu 

Deep sequencing

1029 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (AaegL1): supercont1.785: 213570-213661 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from aae-mir-9b

• aae-mir-306: supercont1.785: 213059-213187 [+]
• aae-mir-79: supercont1.785: 213262-213357 [+]
• aae-mir-9b: supercont1.785: 213570-213661 [+]

Database links

• miRBase Tracker:MI0013530

Mature sequence aae-miR-9b

• Accession: MIMAT0014324
• Sequence: 15 - ucuuuggugauuuuagcuguaugc - 38
• Deep sequencing: 1025 reads, 2 experiments
• Evidence: experimental; 454 [1]

References

1. PMID:19961592 "Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs" Li S, Mead EA, Liang S, Tu Z BMC Genomics. 10:581(2009).