Stem-loop sequence aae-mir-2946

Accession

MI0013532 (change log)

Description

Aedes aegypti miR-2946 stem-loop

Literature search

1 open access papers mention aae-mir-2946
(1 sentences)

Stem-loop

          aa     g          a   c       uuucau 
5' uaugaac  ugauc ccauauuuuu ccg uacugca      u
   |||||||  ||||| |||||||||| ||| |||||||      g
3' auacuug  guuag gguauagaaa ggc augaugu      u
          gg     g          a   -       uaauaa 

Deep sequencing

38 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (AaegL1): supercont1.385: 413565-413652 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from aae-mir-2946

• aae-mir-2946: supercont1.385: 413565-413652 [-]
• aae-mir-2941-2: supercont1.385: 413436-413530 [-]
• aae-mir-2941-1: supercont1.385: 413127-413232 [-]

Database links

• miRBase Tracker:MI0013532

Mature sequence aae-miR-2946

• Accession: MIMAT0014325
• Sequence: 55 - uaguacggaaaagauaugggga - 76
• Deep sequencing: 38 reads, 2 experiments
• Evidence: experimental; 454 [1]

References

1. PMID:19961592 "Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs" Li S, Mead EA, Liang S, Tu Z BMC Genomics. 10:581(2009).