Stem-loop ghr-MIR2949a

Accession

MI0013552

Description

Gossypium hirsutum ghr-MIR2949a precursor miRNA

Gene family

MIPF0000899; MIR2949

Literature search

8 open access papers mention ghr-MIR2949a
(24 sentences)

Sequence

gucuuaguuugcgucuugACUUUUGAACUGGAUUUGCCGAcuugaacugcguuguugaugguuuccaaaacccgagccUGCAAAUCCAGUCAAAAGUUAaaaccgggcugagau
(((((((((((.((.(((((((((((.((((((((((.(.(((((((......)))...(((((...))))))))).).))))))))))))))))))))).)))))))))))))

Structure

           c  c           A          C A    aacugcguuguugau     c 
gucuuaguuug gu uugACUUUUGA CUGGAUUUGC G cuug               gguuu  
||||||||||| || ||||||||||| |||||||||| | ||||               ||||| c
uagagucgggc ca aAUUGAAAACU GACCUAAACG c gagc               ccaaa  
           -  a           -          U c    ---------------     a 

Annotation confidence Not enough data

Genome context

Unknown

Mature ghr-miR2949a-5p

• Accession: MIMAT0014345
• Description: Gossypium hirsutum ghr-miR2949a-5p mature miRNA
• Sequence: 19 - ACUUUUGAACUGGAUUUGCCGA - 40
• Evidence: experimental ; Illumina [1-2]

Mature ghr-miR2949a-3p

• Accession: MIMAT0015374
• Description: Gossypium hirsutum ghr-miR2949a-3p mature miRNA
• Sequence: 79 - UGCAAAUCCAGUCAAAAGUUA - 99
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19889219
   Genome-wide analysis reveals rapid and dynamic changes in miRNA and siRNA sequence and expression during ovule and fiber development in allotetraploid cotton (Gossypium hirsutum L.)
   Pang M, Woodward AW, Agarwal V, Guan X, Ha M, Ramachandran V, Chen X, Triplett BA, Stelly DM, Chen ZJ
   Genome Biol (2009) 10:R122


2. PubMed ID: 19788742
   Enrichment of a set of microRNAs during the cotton fiber development
   Kwak PB, Wang QQ, Chen XS, Qiu CX, Yang ZM
   BMC Genomics (2009) 10:457