Stem-loop ghr-MIR2950

Accession

MI0013555

Description

Gossypium hirsutum ghr-MIR2950 precursor miRNA

Gene family

MIPF0001121; MIR2950

Literature search

10 open access papers mention ghr-MIR2950
(24 sentences)

Sequence

cauggguuuauguuauauuccaucucuugcacacuggacuagccagcuuuuuguuggcuucagcuucagguUGGUGUGCAGGGGGUGGAAUAcaucauugauaucaug
((((((((.(((...(((((((((((((((((((..(((((((((((.....))))))).........)))).)))))))))))))))))))...))).))).)))))

Structure

     -   u   uua                   ug    ---------       u 
caugg guu aug   uauuccaucucuugcacac  gacu         agccagc u
||||| ||| |||   |||||||||||||||||||  ||||         ||||||| u
guacu uag uac   AUAAGGUGGGGGACGUGUG  Uugg         ucgguug u
     a   u   uac                   -G    acuucgacu       u 

Annotation confidence Not enough data

Genome context

Unknown

Mature ghr-miR2950

• Accession: MIMAT0014348
• Description: Gossypium hirsutum ghr-miR2950 mature miRNA
• Sequence: 72 - UGGUGUGCAGGGGGUGGAAUA - 92
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19889219
   Genome-wide analysis reveals rapid and dynamic changes in miRNA and siRNA sequence and expression during ovule and fiber development in allotetraploid cotton (Gossypium hirsutum L.)
   Pang M, Woodward AW, Agarwal V, Guan X, Ha M, Ramachandran V, Chen X, Triplett BA, Stelly DM, Chen ZJ
   Genome Biol (2009) 10:R122