Stem-loop ghr-MIR399c

Accession

MI0013556

Description

Gossypium hirsutum ghr-MIR399c precursor miRNA

Gene family

MIPF0000015; MIR399

Literature search

13 open access papers mention ghr-MIR399c
(35 sentences)

Sequence

agggcuucucugcauuggcagguagaugauaacuccacaucauguaguuaaccUGCCAAAGGAGAGUUGGCCUU
.(((((.((((.(.((((((((((.(((((........))))).).....))))))))).).))))..))))).

Structure

a     -u    g a         ----- g     aac 
 gggcu  cucu c uuggcaggu     a augau   u
 |||||  |||| | |||||||||     | |||||    
 UCCGG  GAGA G AACCGUcca     u uacua   c
U     UU    G A         auuga g     cac 

Annotation confidence Not enough data

Genome context

Unknown

Mature ghr-miR399c

• Accession: MIMAT0014349
• Description: Gossypium hirsutum ghr-miR399c mature miRNA
• Sequence: 54 - UGCCAAAGGAGAGUUGGCCUU - 74
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19889219
   Genome-wide analysis reveals rapid and dynamic changes in miRNA and siRNA sequence and expression during ovule and fiber development in allotetraploid cotton (Gossypium hirsutum L.)
   Pang M, Woodward AW, Agarwal V, Guan X, Ha M, Ramachandran V, Chen X, Triplett BA, Stelly DM, Chen ZJ
   Genome Biol (2009) 10:R122