Stem-loop sequence cqu-mir-1

Accession

MI0013566 (change log)

Description

Culex quinquefasciatus miR-1 stem-loop

Gene family

MIPF0000038; mir-1

Literature search

3 open access papers mention cqu-mir-1
(6 sentences)

Stem-loop

   g   aa            c        a   -  gauc 
5'  cga  guuccaugcuuc uugcauuc aua gu    u
    |||  |||||||||||| |||||||| ||| ||     
3'  gcu  cgagguaugaag aauguaag uau ca    u
   g   cg            a        g   g  aagu 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (CpipJ1): supercont3.78: 246202-246278 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0013566

Mature sequence cqu-miR-1

• Accession: MIMAT0014361
• Sequence: 49 - uggaauguaaagaaguauggag - 70
• Evidence: experimental; Illumina [1]

References

1. PMID:20167119 "Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus" Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR BMC Genomics. 11:119(2010).