miRBase entry: cqu-let-7

Stem-loop cqu-let-7


Accession
MI0013570
Description
Culex quinquefasciatus cqu-let-7 precursor miRNA
Gene family
MIPF0000002; let-7

Literature search
1 open access papers mention cqu-let-7
(2 sentences)

Sequence

ucgcugcucccacguUGAGGUAGUUGGUUGUAUAGUauuaaaaauucaauaucuaCUAUGCAAUCCGCUAGCUUAACuugugagggcgccu
..((.((((.(((((((((.((((.((((((((((((................)))))))))))).)))).))))))..))).))))))..

Structure
uc  u    c   --      G    U            uuaaaaa 
  gc gcuc cac  guUGAG UAGU GGUUGUAUAGUa       u
  || |||| |||  |||||| |||| ||||||||||||        
  cg cggg gug  CAAUUC AUCG CUAACGUAUCau       u
uc  -    a   uu      G    C            cuauaac 


Annotation confidence Not enough data
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Genome context
supercont3.4: 280595-280685 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from cqu-let-7
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cqu-let-7-5p

Accession MIMAT0014366
Description Culex quinquefasciatus cqu-let-7-5p mature miRNA
Sequence 16 - UGAGGUAGUUGGUUGUAUAGU - 36
Evidence experimental
Illumina [1]

Mature cqu-let-7-3p

Accession MIMAT0014367
Description Culex quinquefasciatus cqu-let-7-3p mature miRNA
Sequence 56 - CUAUGCAAUCCGCUAGCUUAAC - 77
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20167119
    Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
    Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
    BMC Genomics (2010) 11:119