miRNA Entry for MI0013570

Stem-loop sequence cqu-let-7

Accession

MI0013570 (change log)

Description

Culex quinquefasciatus let-7 stem-loop

Gene family

MIPF0000002; let-7

Literature search

1 open access papers mention cqu-let-7
(2 sentences)

Stem-loop

   uc  u    c   --      g    u            uuaaaaa 
5'   gc gcuc cac  guugag uagu gguuguauagua       u
     || |||| |||  |||||| |||| ||||||||||||        
3'   cg cggg gug  caauuc aucg cuaacguaucau       u
   uc  -    a   uu      g    c            cuauaac

Get sequence

Confidence

Annotation confidence: not enough data

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Genome context

Coordinates (CpipJ1)	Overlapping transcripts
supercont3.4: 280595-280685 [+]	intergenic

Clustered miRNAs

< 10kb from cqu-let-7
cqu-mir-100	supercont3.4: 271392-271501 [+]
cqu-let-7	supercont3.4: 280595-280685 [+]
cqu-mir-125	supercont3.4: 280955-281049 [+]

Database links

miRBase Tracker:MI0013570

Mature sequence cqu-let-7-5p
Accession	MIMAT0014366
Previous IDs	cqu-let-7
Sequence	16 - ugagguaguugguuguauagu - 36 Get sequence
Evidence	experimental; Illumina [1]

Mature sequence cqu-let-7-3p
Accession	MIMAT0014367
Previous IDs	cqu-let-7*
Sequence	56 - cuaugcaauccgcuagcuuaac - 77 Get sequence
Evidence	experimental; Illumina [1]

References
1	PMID:20167119 "Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus" Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR BMC Genomics. 11:119(2010).

miRBase

Stem-loop sequence cqu-let-7

Mature sequence cqu-let-7-5p

Mature sequence cqu-let-7-3p

References