Stem-loop cqu-mir-1175

Accession

MI0013587

Description

Culex quinquefasciatus cqu-mir-1175 precursor miRNA

Gene family

MIPF0000715; mir-1175

Literature search

2 open access papers mention cqu-mir-1175
(4 sentences)

Sequence

aaaaauuaucacgauaugaaauAAGUGGAGUAGUGGUCUCAUCGcuuaguauuagaaaagUGAGAUUCUACUUCUCCGACUuaauucauauuuagcucgaaac
............((((((((.(((((((((.(((((..((.((((((..........))))))))..))))).)))).))))).))))))))...........

Structure

aaaaauuaucac        a     -    U     UC  A      agua 
            gauaugaa uAAGU GGAG AGUGG  UC UCGcuu    u
            |||||||| ||||| |||| |||||  || ||||||     
            uuauacuu auUCA CCUC UCAUC  AG AGUgaa    u
-caaagcucgau        a     G    U     UU  -      aaga 

Annotation confidence Not enough data

Genome context

supercont3.86: 866094-866196 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cqu-mir-1175

Mature cqu-miR-1175-5p

• Accession: MIMAT0014390
• Description: Culex quinquefasciatus cqu-miR-1175-5p mature miRNA
• Sequence: 23 - AAGUGGAGUAGUGGUCUCAUCG - 44
• Evidence: experimental ; Illumina [1]

Mature cqu-miR-1175-3p

• Accession: MIMAT0014391
• Description: Culex quinquefasciatus cqu-miR-1175-3p mature miRNA
• Sequence: 61 - UGAGAUUCUACUUCUCCGACU - 81
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20167119
   Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
   Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
   BMC Genomics (2010) 11:119