Stem-loop sequence cqu-mir-1175

Accession

MI0013587 (change log)

Description

Culex quinquefasciatus miR-1175 stem-loop

Gene family

MIPF0000715; mir-1175

Literature search

2 open access papers mention cqu-mir-1175
(4 sentences)

Stem-loop

   aaaaauuaucac        a     -    u     uc  a      agua 
5'             gauaugaa uaagu ggag agugg  uc ucgcuu    u
               |||||||| ||||| |||| |||||  || ||||||     
3'             uuauacuu auuca ccuc ucauc  ag agugaa    u
   -caaagcucgau        a     g    u     uu  -      aaga 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (CpipJ1): supercont3.86: 866094-866196 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from cqu-mir-1175

• cqu-mir-1174: supercont3.86: 865899-865962 [+]
• cqu-mir-1175: supercont3.86: 866094-866196 [+]

Database links

• miRBase Tracker:MI0013587

Mature sequence cqu-miR-1175-5p

• Accession: MIMAT0014390
• Previous IDs: cqu-miR-1175
• Sequence: 23 - aaguggaguaguggucucaucg - 44
• Evidence: experimental; Illumina [1]

Mature sequence cqu-miR-1175-3p

• Accession: MIMAT0014391
• Previous IDs: cqu-miR-1175*
• Sequence: 61 - ugagauucuacuucuccgacu - 81
• Evidence: experimental; Illumina [1]

References

1. PMID:20167119 "Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus" Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR BMC Genomics. 11:119(2010).