Stem-loop sequence cqu-mir-1000

Accession

MI0013599 (change log)

Description

Culex quinquefasciatus miR-1000 stem-loop

Gene family

MIPF0000701; mir-1000

Literature search

1 open access papers mention cqu-mir-1000
(1 sentences)

Stem-loop

   --uuuu       aa    uauau       uc         --  uu 
5'       gcuagaa  cgau     uguccug  acagcagua  cu  u
         |||||||  ||||     |||||||  |||||||||  ||  c
3'       cgaucuu  guua     acagggc  uguugucau  ga  c
   cacugc       -a    cauuu       uu         uc  uu 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (CpipJ1): supercont3.153: 102798-102891 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0013599

Mature sequence cqu-miR-1000

• Accession: MIMAT0014403
• Sequence: 19 - auauuguccugucacagcagu - 39
• Evidence: experimental; Illumina [1]

References

1. PMID:20167119 "Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus" Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR BMC Genomics. 11:119(2010).