miRBase entry: cqu-mir-279

Stem-loop cqu-mir-279

Accession

MI0013608

Description

Culex quinquefasciatus cqu-mir-279 precursor miRNA

Gene family

MIPF0000184; mir-279

Sequence

uugucGAUGGGUGUGAAUCUAGUGGUUCacaugagcuuugccaaacugUGACUAGAUCCACACUCAUUAAcaa
.(((.((((((((((.((((((....(((((((.((...))))...))))))))))).)))))))))).))).

Structure

u   c          A      UGGU     ---  a  u 
 ugu GAUGGGUGUG AUCUAG    UCaca   ug gc  
 ||| |||||||||| ||||||    |||||   || || u
 acA UUACUCACAC UAGAUC    AGUgu   ac cg  
a   A          C      ----     caa  -  u

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

supercont3.19: 1441120-1441192 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cqu-mir-279

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cqu-miR-279-5p

Accession	MIMAT0014417
Description	Culex quinquefasciatus cqu-miR-279-5p mature miRNA
Sequence	6 - GAUGGGUGUGAAUCUAGUGGUUC - 28
Evidence	experimental Illumina [1]

Mature cqu-miR-279-3p

Accession	MIMAT0014418
Description	Culex quinquefasciatus cqu-miR-279-3p mature miRNA
Sequence	49 - UGACUAGAUCCACACUCAUUAA - 70
Evidence	experimental Illumina [1]

References

PubMed ID: 20167119
Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
BMC Genomics (2010) 11:119