miRBase entry: cqu-bantam

Stem-loop cqu-bantam


Accession
MI0013610
Description
Culex quinquefasciatus cqu-bantam precursor miRNA
Gene family
MIPF0000153; bantam

Literature search
1 open access papers mention cqu-bantam
(3 sentences)

Sequence

agaaCCGGUUUUCAUUUUCGAUCUGACuuauuugauuuaacagagUGAGAUCAUUUUGAAAGCUGAuuuu
.....(((((((((.....(((((.((((..(((...)))..)))).)))))....))))))))).....

Structure
agaaC         UUUUC     G    au   a 
     CGGUUUUCA     GAUCU ACuu  uug  
     |||||||||     ||||| ||||  ||| u
     GUCGAAAGU     CUAGA Ugag  aau  
uuuuA         -UUUA     G    ac   u 


Annotation confidence Not enough data
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Genome context
supercont3.65: 199694-199763 [-]

Database links

Mature cqu-bantam-5p

Accession MIMAT0014420
Description Culex quinquefasciatus cqu-bantam-5p mature miRNA
Sequence 5 - CCGGUUUUCAUUUUCGAUCUGAC - 27
Evidence experimental
Illumina [1]

Mature cqu-bantam-3p

Accession MIMAT0014421
Description Culex quinquefasciatus cqu-bantam-3p mature miRNA
Sequence 46 - UGAGAUCAUUUUGAAAGCUGA - 66
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20167119
    Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
    Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
    BMC Genomics (2010) 11:119