Stem-loop sequence cqu-bantam

Accession

MI0013610 (change log)

Description

Culex quinquefasciatus bantam stem-loop

Gene family

MIPF0000153; bantam

Literature search

1 open access papers mention cqu-bantam
(3 sentences)

Stem-loop

   agaac         uuuuc     g    auuug 
5'      cgguuuuca     gaucu acuu     a
        |||||||||     ||||| ||||     u
3'      gucgaaagu     cuaga ugag     u
   uuuua         -uuua     g    acaau 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (CpipJ1): supercont3.65: 199694-199763 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0013610

Mature sequence cqu-bantam-5p

• Accession: MIMAT0014420
• Previous IDs: cqu-bantam
• Sequence: 5 - ccgguuuucauuuucgaucugac - 27
• Evidence: experimental; Illumina [1]

Mature sequence cqu-bantam-3p

• Accession: MIMAT0014421
• Previous IDs: cqu-bantam*
• Sequence: 46 - ugagaucauuuugaaagcuga - 66
• Evidence: experimental; Illumina [1]

References

1. PMID:20167119 "Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus" Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR BMC Genomics. 11:119(2010).