miRBase entry: cqu-mir-1889

Stem-loop cqu-mir-1889


Accession
MI0013628
Description
Culex quinquefasciatus cqu-mir-1889 precursor miRNA
Gene family
MIPF0000954; mir-1889

Literature search
2 open access papers mention cqu-mir-1889
(7 sentences)

Sequence

uugcaccgucccggagUAAUCUCAAAUUGUAACAGUGGguuuuuucaacggcaaagcacaaacuuugaaacgucccuccguucgagagaacauuugcuauaccCACGUUACAGAUUGGGGUUUCCccgggucgugccgu
..((((.(.(((((.(.((((((((.(((((((.((((((((((((((((((((((......)))))..........))))).))))))...........))))))))))))).)))))))).).))))).)))))...

Structure
-uu    c u     a U        A       A      -----------      -     ----------     ca 
   gcac g cccgg g AAUCUCAA UUGUAAC GUGGgu           uuuuuc aacgg          caaag  c
   |||| | ||||| | |||||||| ||||||| ||||||           |||||| |||||          |||||   
   cgug c gggcc C UUGGGGUU GACAUUG CACcca           agagag uugcc          guuuc  a
ugc    - u     C U        A       -      uaucguuuaca      c     ucccugcaaa     aa 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
supercont3.57: 562539-562677 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from cqu-mir-1889
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cqu-miR-1889-5p

Accession MIMAT0014440
Description Culex quinquefasciatus cqu-miR-1889-5p mature miRNA
Sequence 17 - UAAUCUCAAAUUGUAACAGUGG - 38
Evidence experimental
Illumina [1]

Mature cqu-miR-1889-3p

Accession MIMAT0014441
Description Culex quinquefasciatus cqu-miR-1889-3p mature miRNA
Sequence 104 - CACGUUACAGAUUGGGGUUUCC - 125
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20167119
    Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
    Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
    BMC Genomics (2010) 11:119