Stem-loop sequence cqu-mir-1889

Accession

MI0013628 (change log)

Description

Culex quinquefasciatus miR-1889 stem-loop

Gene family

MIPF0000954; mir-1889

Literature search

2 open access papers mention cqu-mir-1889
(6 sentences)

Stem-loop

   -uu    c u     a u        a       a      uuuuucaacggcaaagcacaaacuuugaa 
5'    gcac g cccgg g aaucucaa uuguaac gugggu                             a
      |||| | ||||| | |||||||| ||||||| ||||||                              
3'    cgug c gggcc c uugggguu gacauug caccca                             c
   ugc    - u     c u        a       -      uaucguuuacaagagagcuugccucccug 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (CpipJ1): supercont3.57: 562539-562677 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from cqu-mir-1889

• cqu-mir-283: supercont3.57: 559440-559549 [+]
• cqu-mir-1889: supercont3.57: 562539-562677 [+]
• cqu-mir-12: supercont3.57: 562944-563041 [+]

Database links

• miRBase Tracker:MI0013628

Mature sequence cqu-miR-1889-5p

• Accession: MIMAT0014440
• Previous IDs: cqu-miR-1889
• Sequence: 17 - uaaucucaaauuguaacagugg - 38
• Evidence: experimental; Illumina [1]

Mature sequence cqu-miR-1889-3p

• Accession: MIMAT0014441
• Previous IDs: cqu-miR-1889*
• Sequence: 104 - cacguuacagauugggguuucc - 125
• Evidence: experimental; Illumina [1]

References

1. PMID:20167119 "Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus" Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR BMC Genomics. 11:119(2010).