Stem-loop sequence tgu-let-7d

Accession

MI0013750 (change log)

Description

Taeniopygia guttata let-7d stem-loop

Gene family

MIPF0000002; let-7

Literature search

1 open access papers mention tgu-let-7d
(1 sentences)

Stem-loop

     u       a              c      -------  a      g 
5' gc ccuagga gagguaguagguug auaguu       uu gggcag g
   || ||||||| |||||||||||||| ||||||       || |||||| a
3' cg ggauucu uuccgucguccaac uaucaa       ag cucguu u
     -       -              a      uggagga  a      u 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (taeGlu3.2.4): chr12: 773412-773503 [+]
• Overlapping transcripts:

  sense

  ENSTGUT00000018416 ; tgu-let-7d-201; exon 1

Clustered miRNAs

< 10kb from tgu-let-7d

• tgu-let-7a-3: chr12: 772013-772103 [+]
• tgu-let-7f: chr12: 772417-772508 [+]
• tgu-let-7d: chr12: 773412-773503 [+]
• tgu-mir-2987: chr12: 776733-776812 [+]

Database links

• miRBase Tracker:MI0013750

Mature sequence tgu-let-7d-5p

• Accession: MIMAT0014536
• Sequence: 11 - agagguaguagguugcauaguu - 32
• Evidence: experimental; 454 [1], Illumina [1-2]

Mature sequence tgu-let-7d-3p

• Accession: MIMAT0026992
• Sequence: 65 - cuauacaaccugcugccuuucu - 86
• Evidence: experimental; Illumina [2]

References

1. PMID:20360741 "The genome of a songbird" Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li Nature. 464:757-762(2010).
2. PMID:23268654 "Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression" Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X BMC Genomics. 13:727(2012).