Stem-loop sequence bmo-mir-2998

Accession

MI0013854 (change log)

Description

Bombyx mori miR-2998 stem-loop

Literature search

1 open access papers mention bmo-mir-2998
(5 sentences)

Stem-loop

           ga  a   -  -   aa    uu    ag  g     --  a 
5' aagaacag  ug ggu ag aua  cagg  aagg  ug cugga  ac a
   ||||||||  || ||| || |||  ||||  ||||  || |||||  || g
3' uucuuguu  ac ccg uc uau  gucu  uuuc  au ggcuu  ug g
           -a  -   a  a   aa    --    ga  g     au  a 

Deep sequencing

837 reads, 66.7 reads per million, 3 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

Coordinates (ASM15162v1; GCA_000151625.1)	Overlapping transcripts
NW_004581712.1: 4762-4856 [+]	intergenic
NW_004582017.1: 3512109-3512203 [-]	intergenic
NW_004582020.1: 5921517-5921611 [+]	intergenic

Clustered miRNAs

< 10kb from bmo-mir-2998

• bmo-mir-3238: NW_004581712.1: 3566-3680 [+]
• bmo-mir-2998: NW_004581712.1: 4762-4856 [+]

Database links

• miRBase Tracker:MI0013854

Mature sequence bmo-miR-2998

• Accession: MIMAT0014659
• Sequence: 1 - aagaacaggaugagguagauaaa - 23
• Deep sequencing: 765 reads, 3 experiments
• Evidence: experimental; Illumina [1], SOLID [2]
• Database links:
  • RNAcentral:URS0000141BDA_7091

References

1. PMID:20089182 "Deep sequencing of small RNA libraries reveals dynamic regulation of conserved and novel microRNAs and microRNA-stars during silkworm development" Jagadeeswaran G, Zheng Y, Sumathipala N, Jiang H, Arrese EL, Soulages JL, Zhang W, Sunkar R BMC Genomics. 11:52(2010).
2. PMID:20229201 "Novel microRNAs in silkworm (Bombyx mori)" Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J Funct Integr Genomics. 10:405-415(2010).