Stem-loop api-mir-1

Accession

MI0013909

Description

Acyrthosiphon pisum api-mir-1 precursor miRNA

Gene family

MIPF0000038; mir-1

Literature search

2 open access papers mention api-mir-1
(12 sentences)

Sequence

ccguacuucuuguauguucgcauagugugcgcgagccauuuggccgaauuuuacgacguaUGGAAUGUAAAGAAGUAUGGAG
(((((((((((.(((((((.(((((((((..((.(((....))))).....))).)).))))))))))))))))))))))..

Structure

--           g       g    -  -   ---cg  a   a 
  ccguacuucuu uauguuc caua gu gug     cg gcc u
  ||||||||||| ||||||| |||| || |||     || |||  
  GGUAUGAAGAA AUGUAAG GUau ca cau     gc cgg u
GA           -       -    g  g   uuuaa  -   u 

Annotation confidence Not enough data

Genome context

GL350503.1: 79303-79384 [+]

Mature api-miR-1

• Accession: MIMAT0014710
• Description: Acyrthosiphon pisum api-miR-1 mature miRNA
• Sequence: 61 - UGGAAUGUAAAGAAGUAUGGAG - 82
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20444247
   Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
   Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
   BMC Genomics (2010) 11:281