miRBase entry: api-mir-3054

Stem-loop api-mir-3054


Accession
MI0014017
Description
Acyrthosiphon pisum api-mir-3054 precursor miRNA


Sequence

UUAGUGGAUUCGCCUGUUGACACCGGCacccuggucaugaccaccaucucaccaggguuagguuaggcagguccgccaggg
...(((((((.(((((.....(((...((((((((.(((.....)))...))))))))..)))))))).))))))).....

Structure
--UUA       C     UUGAC   GGC        --c   a 
     GUGGAUU GCCUG     ACC   acccuggu   aug c
     ||||||| |||||     |||   ||||||||   ||| c
     cgccugg cggau     ugg   ugggacca   uac a
gggac       a     -----   -au        cuc   c 


Annotation confidence Not enough data
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Genome context
GL349677.1: 657048-657128 [+]

Database links

Mature api-miR-3054

Accession MIMAT0014797
Description Acyrthosiphon pisum api-miR-3054 mature miRNA
Sequence 1 - UUAGUGGAUUCGCCUGUUGACACCGGC - 27
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20444247
    Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
    Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
    BMC Genomics (2010) 11:281