miRBase entry: hsa-mir-3116-1

Stem-loop hsa-mir-3116-1

Accession

MI0014128

Symbol

HGNC: MIR3116-1

Description

Homo sapiens hsa-mir-3116-1 precursor miRNA mir-3116

Gene
family?

RF03754; mir-3116

Literature search

1 open access papers mention hsa-mir-3116-1
(1 sentences)

Sequence

116 reads, 1 reads per million, 37 experiments

cuuuauugagucccuacuauguuccaggcacuggguaucguaggUGCCUGGAACAUAGUAGGGACUcaauaaag
((((((((((((((((((((((((((((((((..........))))))))))))))))))))))))))))))))

Structure

                                gggu 
cuuuauugagucccuacuauguuccaggcacu    a
||||||||||||||||||||||||||||||||     
gaaauaacUCAGGGAUGAUACAAGGUCCGUgg    u
                                augc

Annotation confidence Low

Do you think this miRNA is real?

Genome context

chr1: 62078786-62078859 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from hsa-mir-3116-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Disease association

hsa-mir-3116-1 is associated with one or more human diseases in the Human microRNA Disease Database

Disease	Description	Category	PubMed ID

Database links

Mature hsa-miR-3116

Accession	MIMAT0014978
Description	Homo sapiens hsa-miR-3116 mature miRNA
Sequence	45 - UGCCUGGAACAUAGUAGGGACU - 66
Evidence	experimental Illumina [1-2]
Database links
Predicted targets

References

PubMed ID: 20300190
Characterization of the Melanoma miRNAome by Deep Sequencing
"Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK"
"PLoS One (2010) 5:e9685