miRBase entry: hsa-mir-548t

Stem-loop hsa-mir-548t


Accession
MI0014164
Symbol
HGNC: MIR548T
Description
Homo sapiens hsa-mir-548t precursor miRNA
Gene family
MIPF0000317; mir-548

Literature search
41 open access papers mention hsa-mir-548t
(142 sentences)

Sequence

4180 reads, 104 reads per million, 110 experiments
aggguggugCAAAAGUGAUCGUGGUUUUUGcaauuuuuuaaugacAAAAACCACAAUUACUUUUGCACCAaccu
(((.(((((((((((((((.((((((((((..(((....)))..)))))))))).))))))))))))))).)))

Structure
   g               C          ca   u 
agg uggugCAAAAGUGAU GUGGUUUUUG  auu u
||| ||||||||||||||| ||||||||||  |||  
ucc ACCACGUUUUCAUUA CACCAAAAAc  uaa u
   a               A          ag   u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr4: 173268160-173268233 [+]

Disease association
hsa-mir-548t is associated with one or more human diseases in the Human microRNA Disease Database
Disease Description Category PubMed ID


Database links

Mature hsa-miR-548t-5p

Accession MIMAT0015009
Description Homo sapiens hsa-miR-548t-5p mature miRNA
Sequence 10 - CAAAAGUGAUCGUGGUUUUUG - 30
Evidence experimental
Illumina [1], Northern [2]
Database links
Predicted targets

Mature hsa-miR-548t-3p

Accession MIMAT0022730
Description Homo sapiens hsa-miR-548t-3p mature miRNA
Sequence 46 - AAAAACCACAAUUACUUUUGCACCA - 70
Evidence not_experimental
Database links
Predicted targets

References

  1. PubMed ID: 20300190
    Characterization of the Melanoma miRNAome by Deep Sequencing
    "Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK"
    "PLoS One (2010) 5:e9685

  2. PubMed ID: 20532037
    Re-inspection of small RNA sequence datasets reveals several novel human miRNA genes
    Hansen TB, Bramsen JB, Kjems J
    PLoS One (2010) 5:e10961