miRBase entry: hsa-mir-548u

Stem-loop hsa-mir-548u


Accession
MI0014168
Symbol
HGNC: MIR548U
Description
Homo sapiens hsa-mir-548u precursor miRNA
Gene family
MIPF0000317; mir-548

Literature search
42 open access papers mention hsa-mir-548u
(142 sentences)

Sequence

838 reads, 33 reads per million, 50 experiments
auuaggauggugcaaaaguaaugugguuuuuuucuuuacuuuuaauggCAAAGACUGCAAUUACUUUUGCGccaaccuaau
((((((.((((((((((((((((((((((((.((.(((....))).)).))))))))).))))))))))))))).))))))

Structure
      a               -         u  u   c 
auuagg uggugcaaaaguaau gugguuuuu uc uua u
|||||| ||||||||||||||| ||||||||| || |||  
uaaucc accGCGUUUUCAUUA CGUCAGAAA gg aau u
      a               A         C  u   u 


Annotation confidence Not enough data
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Genome context
chr6: 57390132-57390212 [+]

Database links

Mature hsa-miR-548u

Accession MIMAT0015013
Description Homo sapiens hsa-miR-548u mature miRNA
Sequence 49 - CAAAGACUGCAAUUACUUUUGCG - 71
Evidence experimental
Illumina [1]
Database links
Predicted targets

References

  1. PubMed ID: 20300190
    Characterization of the Melanoma miRNAome by Deep Sequencing
    "Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK"
    "PLoS One (2010) 5:e9685