miRBase entry: hsa-mir-3179-3

Stem-loop hsa-mir-3179-3


Accession
MI0014221
Symbol
HGNC: MIR3179-3
Description
Homo sapiens hsa-mir-3179-3 precursor miRNA
Gene family
MIPF0000900; mir-3179

Literature search
3 open access papers mention hsa-mir-3179-3
(6 sentences)

Sequence

584 reads, 25 reads per million, 52 experiments
caggaucacagacguuuaaauuacacuccuucugcugugccuuacagcaguAGAAGGGGUGAAAUUUAAACGUcugugauccug
((((((((((((((((((((((.(((((((((((((((........))))))))))))))).))))))))))))))))))))))

Structure
                      a               gcc 
caggaucacagacguuuaaauu cacuccuucugcugu   u
|||||||||||||||||||||| |||||||||||||||    
guccuagugucUGCAAAUUUAA GUGGGGAAGAugacg   u
                      A               aca 


Annotation confidence Not enough data
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Genome context
chr16: 18411894-18411977 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from hsa-mir-3179-3
Name Accession Chromosome Start End Strand Confidence




Database links

Mature hsa-miR-3179

Accession MIMAT0015056
Description Homo sapiens hsa-miR-3179 mature miRNA
Sequence 52 - AGAAGGGGUGAAAUUUAAACGU - 73
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 20300190
    Characterization of the Melanoma miRNAome by Deep Sequencing
    "Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK"
    "PLoS One (2010) 5:e9685

  2. PubMed ID: 21199797
    Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene
    "Persson H, Kvist A, Rego N, Staaf J, Vallon-Christersson J, Luts L, Loman N, Jonsson G, Naya H, Hoglund M, Borg A, Rovira C"
    "Cancer Res (2011) 71:78-86