Stem-loop sequence bmo-mir-3351

Accession

MI0014409 (change log)

Description

Bombyx mori miR-3351 stem-loop

Gene family

MIPF0000847; mir-3267

Literature search

1 open access papers mention bmo-mir-3351
(2 sentences)

Stem-loop

   -    --cgcau     -    --g  --u      g   --gcc   a 
5'  guag       uuacg uugu   ga   gucuau ggc     agu a
    ||||       ||||| ||||   ||   |||||| |||     |||  
3'  cauc       agugc aaca   uu   cgggug ucg     uca c
   u    uuuuauu     u    aaa  ugu      g   acaau   u 

Deep sequencing

541 reads, 0 reads per million, 3 experiments

Confidence

Annotation confidence: not enough data

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Genome context

Coordinates (ASM15162v1; GCA_000151625.1)	Overlapping transcripts
NW_004582023.1: 4826212-4826301 [-]	intergenic
NW_004582427.1: 3282-3371 [+]	intergenic
NW_004621618.1: 320-409 [+]	intergenic

Database links

• miRBase Tracker:MI0014409

Mature sequence bmo-miR-3351

• Accession: MIMAT0015536
• Sequence: 10 - uuacguuguggaugucuaugggc - 32
• Deep sequencing: 514 reads, 3 experiments
• Evidence: experimental; SOLID [1]
• Database links:
  • RNAcentral:URS0000305089_7091

References

1. PMID:20229201 "Novel microRNAs in silkworm (Bombyx mori)" Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J Funct Integr Genomics. 10:405-415(2010).